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 | Acceso al texto completo restringido a Biblioteca INIA Las Brujas. Por información adicional contacte bibliolb@inia.org.uy. |
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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
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Fecha : |
15/03/2023 |
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Actualizado : |
15/03/2023 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
LONDOÑO-GIL, M.; CARDONA-CIFUENTES, D.; ESPIGOLAN, R.; PERIPOLLI, E.; LÔBO, R. B.; PEREIRA, A. S. C.; AGUILAR, I.; BALDI, F. |
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Afiliación : |
MARISOL LONDOÑO-GIL, Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista Júlio de Mesquita Filho, Via de Acesso Prof. Paulo Donato Castellane s/n, CEP, SP, Jaboticabal, 14884-900, Brazil; DANIEL CARDONA-CIFUENTES, Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista Júlio de Mesquita Filho, Via de Acesso Prof. Paulo Donato Castellane s/n, CEP, SP, Jaboticabal, 14884-900, Brazil; RAFAEL ESPIGOLAN, Faculdade de Zootecnia e Engenharia de Alimentos, Universidade de São Paulo, Av. Duque de Caxias Norte, 225m Campus Fernando Costa – USP, CEP, SP, Pirassununga, 13635-900, Brazil; ELISA PERIPOLLI, Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista Júlio de Mesquita Filho, Via de Acesso Prof. Paulo Donato Castellane s/n, CEP, SP, Jaboticabal, 14884-900, Brazil; RAYSILDO B. LÔBO, Associação Nacional de Criadores e Pesquisadores (ANCP), Rua João Godoy, 463, Jardim América, CEP, SP, Ribeirão Preto, 14020-230, Brazil; ANGÉLICA S. C. PEREIRA, Faculdade de Medicina Veterinária e Zootecnia, Universidade de São Paulo, Av. Duque de Caxias Norte, 225 Campus Fernando Costa Jardim Elite, CEP, SP, Pirassununga, 13635-900, Brazil; IGNACIO AGUILAR GARCIA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; FERNANDO BALDI, Faculdade de Zootecnia e Engenharia de Alimentos, Universidade de São Paulo, Av. Duque de Caxias Norte, 225m Campus Fernando Costa – USP, CEP, SP, Pirassununga, 13635-900, Brazil. |
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Título : |
Genomic evaluation of commercial herds with different pedigree structures using the single-step genomic BLUP in Nelore cattle. |
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Fecha de publicación : |
2023 |
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Fuente / Imprenta : |
Tropical Animal Health and Production, 2023, Volume 55, Issue 2, Article 95. doi: https://doi.org/10.1007/s11250-023-03508-4 |
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ISSN : |
0049-4747 |
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DOI : |
10.1007/s11250-023-03508-4 |
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Idioma : |
Inglés |
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Notas : |
Article history: Received 28 April 2022, Accepted 11 February 2023, To be Published April 2023. -- Correspondence author: Cardona-Cifuentes, D.; Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista Júlio de Mesquita Filho, Via de Acesso Prof. Paulo Donato Castellane s/n, CEP, SP, Jaboticabal, Brazil; email:daniel.cardona@unesp.br -- FUNDING: This work was supported by the São Paulo Research Foundation, FAPESP (grant number 2016/22751-6). -- Publisher: Springer Science and Business Media B.V. -- |
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Contenido : |
The aim of this work was to evaluate the impact of applying genomic information in pedigree uncertainty situations on genetic evaluations for growth- and cow productivity-related traits in Nelore commercial herds. Records for accumulated cow productivity (ACP) and adjusted weight at 450 days of age (W450) were used, as well as genotypes of registered and commercial herd animals, genotyped with the Clarifide Nelore 3.1 panel (~29,000 SNPs). The genetic values for commercial and registered populations were estimated using different approaches that included (ssGBLUP) or did not include genomic information (BLUP), with different pedigree structures. Different scenarios were tested, varying the proportion of young animals with unknown sires (0, 25, 50, 75, and 100%), and unknown maternal grandsires (0, 25, 50, 75, and 100%). The prediction accuracies and abilities were calculated. The estimated breeding value accuracies decreased as the proportion of unknown sires and maternal grandsires increased. The genomic estimated breeding value accuracy using the ssGBLUP was higher in scenarios with a lower proportion of known pedigree when compared to the BLUP methodology. The results obtained with the ssGBLUP showed that it is possible to obtain reliable direct and indirect predictions for young animals from commercial herds without pedigree structure. © 2023, The Author(s), under exclusive licence to Springer Nature B.V. |
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Palabras claves : |
Beef cattle; Genomic prediction; Genomic selection; Pedigree uncertainty. |
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Asunto categoría : |
L10 Genética y mejoramiento animal |
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Marc : |
LEADER 02904naa a2200289 a 4500
001 1063978
005 2023-03-15
008 2023 bl uuuu u00u1 u #d
022 $a0049-4747
024 7 $a10.1007/s11250-023-03508-4$2DOI
100 1 $aLONDOÑO-GIL, M.
245 $aGenomic evaluation of commercial herds with different pedigree structures using the single-step genomic BLUP in Nelore cattle.$h[electronic resource]
260 $c2023
500 $aArticle history: Received 28 April 2022, Accepted 11 February 2023, To be Published April 2023. -- Correspondence author: Cardona-Cifuentes, D.; Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista Júlio de Mesquita Filho, Via de Acesso Prof. Paulo Donato Castellane s/n, CEP, SP, Jaboticabal, Brazil; email:daniel.cardona@unesp.br -- FUNDING: This work was supported by the São Paulo Research Foundation, FAPESP (grant number 2016/22751-6). -- Publisher: Springer Science and Business Media B.V. --
520 $aThe aim of this work was to evaluate the impact of applying genomic information in pedigree uncertainty situations on genetic evaluations for growth- and cow productivity-related traits in Nelore commercial herds. Records for accumulated cow productivity (ACP) and adjusted weight at 450 days of age (W450) were used, as well as genotypes of registered and commercial herd animals, genotyped with the Clarifide Nelore 3.1 panel (~29,000 SNPs). The genetic values for commercial and registered populations were estimated using different approaches that included (ssGBLUP) or did not include genomic information (BLUP), with different pedigree structures. Different scenarios were tested, varying the proportion of young animals with unknown sires (0, 25, 50, 75, and 100%), and unknown maternal grandsires (0, 25, 50, 75, and 100%). The prediction accuracies and abilities were calculated. The estimated breeding value accuracies decreased as the proportion of unknown sires and maternal grandsires increased. The genomic estimated breeding value accuracy using the ssGBLUP was higher in scenarios with a lower proportion of known pedigree when compared to the BLUP methodology. The results obtained with the ssGBLUP showed that it is possible to obtain reliable direct and indirect predictions for young animals from commercial herds without pedigree structure. © 2023, The Author(s), under exclusive licence to Springer Nature B.V.
653 $aBeef cattle
653 $aGenomic prediction
653 $aGenomic selection
653 $aPedigree uncertainty
700 1 $aCARDONA-CIFUENTES, D.
700 1 $aESPIGOLAN, R.
700 1 $aPERIPOLLI, E.
700 1 $aLÔBO, R. B.
700 1 $aPEREIRA, A. S. C.
700 1 $aAGUILAR, I.
700 1 $aBALDI, F.
773 $tTropical Animal Health and Production, 2023, Volume 55, Issue 2, Article 95. doi: https://doi.org/10.1007/s11250-023-03508-4
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| 1. |  | NOYES, N. R.; ABDO, Z.; ROVIRA, P.J.; DOSTER, E.; YANG, X.; LINKE, L. M.; BURGESS, B. A.; MARTIN. J.; BOUCHER, C.; MORLEY, P. S.; BELK, K. E. A bayesian approach to investigating the effect of metaphylaxis on the microbiome-resistance of the commercial feedlot steers. Abstract. In: Plant and Animal Genome Conference, 24. San Diego, USA, 2016.| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Treinta y Tres. |
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| 2. | | NOYES, N.; WEINROTH, M.; LAKIN, S.; DOSTER, E.; RAYMOND, R.; ROVIRA, P.J.; ABDO, Z.; RUIZ, J.; MARTIN, J.; BOUCHER, C.; JONES, K.; BELK, K.E. Comparing the resistome of poultry, swine, cattle and salmon production and nearby human waste water treatment plants. [Abstract]. In: Conference of Research Workers in Animal Diseases, 96th, 2015,Chicago (USA): CRWAD, 2015. p. 127.| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Treinta y Tres. |
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| 3. | | NOYES, N.R.; WEINROTH, M.E.; PARKER, J.K.; DEAN, C.J.; LAKIN, S.M.; RAYMOND, R.A.; ROVIRA, P.J.; DOSTER, E.; ABDO, Z.; MARTIN, J.N.; JONES, K.L.; RUIZ, J.; BOUCHER, C.A.; BELK, K.E.; MORLEY, P.S. Enrichment allows identification of diverse, rate elements in metagenomic resistome-virulome sequencing. Microbiome, 2017, 5, p. 142 13 p. Article History: Received: 29 May 2017, Accepted: 5 October 2017, Published: 17 October 2017| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - A |
| Biblioteca(s): INIA Treinta y Tres. |
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| 5. | | WEINROTH, M.D.; YANG, X.; NOYES, N.R.; ROVIRA, P.J.; MARTIN, J.N.; MORLEY, P.S.; BELK, K.E. Foodborne pathogens and virulence in the microbiome of cattle grown naturally verses conventionally. In: 63rd International Congress of Meat Science and Technology. Cork. Ireland. 2017. Troy, D.; McDonnell, C.; Hinds, L.; Kerry, J. eds. Nurturing locally, growing globally. The Netherlands: Wageningen Academic Publishers, 2017. p. 505-507| Tipo: Trabajos en Congresos/Conferencias |
| Biblioteca(s): INIA Treinta y Tres. |
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| 6. | | AMORIM, S.T.; KLUSKA, S.; PIATTO BERTON, M.; ANTUNES DE LEMOS, M.V.; PERIPOLLI, E.; BONVINO STAFUZZA, N.; FERNÁNDEZ MARTÍN, J.; SAURA ÁLVAREZ, M.; VILLANUEVA GAVIÑA, B.; TORO, M.A.; BANCHERO, G.; SILVA OLIVEIRA, P.; GRIGOLETTO, L.; PEREIRA ELER, J.; BALDI, F.; STERMAN FERRAZ, J.B. Genomic study for maternal related traits in Santa Inês sheep breed. Livestock Science, November 2018, Volume 217, Pages 76-84. Doi: https://doi.org/10.1016/j.livsci.2018.09.011 Article history: Received 23 January 2018 // Revised 6 September 2018 // Accepted 11 September 2018 // Available online 20 September 2018.| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas. |
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| 7. | | NOYES, N.R.; PARKER, J.K.; DEAN, C.J.; RAYMOND, R.A.; WEINROTH, M.E.; ROVIRA, P.J.; DOSTER, E.; ABDO, Z.; MARTIN, J.; JONES, K.L.; RUIZ, J.; BOUCHER, C.A.; BELK, K.E.; MORLEY, P.S. Megarich, a pre-sequencing capture system for enriching and counting resistance genes within metagenomic samples. [Abstract]. In: PROCEEDINGS OF THE 96TH ANNUAL CONFERENCE OF RESEARCH WORKERS IN ANIMAL DEISEASES, CHICAGO, USA. 2016. Session Ecology and Management of Foodborne Agents. - 064.| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Treinta y Tres. |
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| 8. | | GAURAV, K.; ARORA, S.; SILVA, P.; SÁNCHEZ-MARTÍN, J.; HORSNELL,R.; GAO, L.; BRAR ,G.S.; WIDRIG,V.; JOHN RAUPP,W.; SINGH, N.; WU, S.; KALE, S.M.; CHINOY, C.; NICHOLSON, P.; QUIROZ-CHÁVEZ, J.; SIMMONDS, J.; HAYTA, S.; SMEDLEY, M. A; HARWOOD, W.; PEARCE, S.; GILBERT, D.; KANGARA, N.; GARDENER, C.; FORNER-MARTÍNEZ, M.; LIU, J.; YU, G.; BODEN, S.A.; PASCUCCI, A.; GHOSH, S.; HAFEEZ, A.N.; O'HARA, T.; WAITES, J.; CHEEMA, J.; STEUERNAGEL, B.; PATPOUR, M.; JUSTESEN, A.F.; LIU, S.; RUDD, J. C.; AVNI, R.; SHARON, A.R; STEINER, B.; KIRANA, R.P.; BUERSTMAYR, H.; MEHRABI, A.A.; NASYROVA, F.Y.; CHAYUT, N.; MATNY, O.; STEFFENSON, B. J.; SANDHU, N.; CHHUNEJA, P.; LAGUDAH, E.; ELKOT, A.F.; TYRRELL, S.; BIAN, X.; DAVEY, R.P.; SIMONSEN, M.; SCHAUSER, L.; TIWARI, V.K.; RANDY KUTCHER, H.; HUCL, P.; LI, A.; LIU, D.C.; MAO, L.; XU, S.; BROWN-GUEDIRA, G.; FARIS, J.; DVORAK, J.; LUO, M.CH.; KRASILEVA, K.; LUX, T.; ARTMEIER, S.; MAYER, K. F. X.; UAUY, C.; MASCHER, M.; BENTLEY, A.R.; KELLER, B.; POLAND, J.; WULFF, B. B. H. Population genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement. Nature Biotechnology, Volume 40, Pages 422-431, March 2022. Open Access. doi: https://doi.org/10.1038/s41587-021-01058-4| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA La Estanzuela. |
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| Registros recuperados : 9 | |
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